r - Cannot get Plots from ggplot in Rstudio -


i'm new r. have been working on plotting data, working fine, of sudden i'm not getting plot in rstudio. i've reinstalled rstudio. missing in code? thanks

    library(ggplot2)     library(rmisc)     srl<-summaryse(combinedwinrhizosigmaplot, measurevar="slr", groupvars=c("rootstock"))     offset.v = -3     offest.h = 0.5     ggplot(srl,aes(x=roostock, y=srl, ymax=70000, ymin = 0)) +     geom_bar(stat="idendity",fill="gray50", colour="black", width = 0.7) +     geom_errorbar(aes(ymax=srl+se, ymin=srl-se), width = 0.0, size=0.5, color = "black")+     geom_text(aes(label=c("bc","bc","a","cde","g","fg","efg","cd","defg","cdefg","ab","a","cd","cdef","defg","cd","a","cdefg"), hjust=offest.h, vjust=offest.v) +    labs(x = "rootstock", y = "specific root length") + theme_bw() +     theme(panel.grid.major.x = element_blank(),     panel.grid.major.y = element_line(colour = "grey80"),     plot.title = element_text(size = rel(1.5),     face = "bold", vjust = 1.5),     axis.title = element_text(face = "bold"),     axis.title.y = element_text(vjust=1.8),     axis.title.x = element_text(vjust= -0.5),     panel.border = element_rect(colour="black")    )

since cannot attach .csv file, here dataset combinedwinrhizosigmaplot, partial since quite large , cannot attach it. geom_text not correct since number of rootstock less in sample dataset in total set. thank you!

    rootstock   slr       33739.58824       29812.64286       29209       31410.58824       31833.39474       18747.52381       38536.79412       25384.61702       30997.22835       17498.90625       24195.32258       23230.88158       41197.3       49207.17391       49459.625       48379.08333       39909.5       34406.26316       34062.32       41217.35417       37801.85333       32362.85235       29592.44144       41183.56311     b   30143.42857     b   36234.45455     b   20233.33333     b   37056     b   28529.67568     b   34542.05263     b   37576.95238     b   34754.15625     b   20086.33333     b   29096.5     b   25690.225     b   21062.61832     b   38229.04167     b   31150.44     b   42008.95652     b   40174.88571     b   39374.97059     b   34751.96296     b   44326.18333     b   35507.5283     b   36021.58242     b   40078.10744     b   34904.34667     b   34403.11594     c   33633.44444     c   30306     c   44506     c   24916.11111     c   45506.75     c   30893.53333     c   63469.6     c   29932.19231     c   33791.26563     c   21850.45714     c   24615.34328     c   29308.10484     c   50217     c   55341.42857     c   54483.71429     c   51372.22222     c   50002.14286     c   43051.16667     c   49146.46667     c   48473.44231     c   32102.69298     c   35886.97647     c   34507.8     c   45671.38636

this work. @teja picking few typos.

there few other typos in code, careful next time. calculated upper , lower bars prior running plot (seems way go ggplot2 v2). did not include geom_text() expression because of text missing, code should fix problem.

srl$lower <- srl$slr - srl$se srl$upper <- srl$slr + srl$se  ggplot(srl,aes(x=rootstock, y=slr)) +     geom_bar(stat="identity",fill="gray50", colour="black", width = 0.7) + geom_errorbar(aes(ymax=upper, ymin=lower), size=0.5, color = "black") +    labs(x = "rootstock", y = "specific root length") + theme_bw() +     theme(panel.grid.major.x = element_blank(),           panel.grid.major.y = element_line(colour = "grey80"),           plot.title = element_text(size = rel(1.5),                                     face = "bold", vjust = 1.5),           axis.title = element_text(face = "bold"),           axis.title.y = element_text(vjust=1.8),           axis.title.x = element_text(vjust= -0.5),           panel.border = element_rect(colour="black")     )

this give enter image description here


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